Below you may find selected research articles from Mathematics, Physics, and Computer Science faculty in the Schmid College of Science and Technology.

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Submissions from 2023

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Many Infinities, or Only One?, Giovanna Giardina, Marco Panza, and Daniele C. Struppa

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The Structure of Locally Integral Involutive Po-monoids and Semirings, José Gil-Férez, Peter Jipsen, and Siddhartha Lodhia

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Novel Allosteric Effectors Targeting Human Transcription Factor TEAD, Mayar Terek Ibrahim, Gennady M. Verkhivker, Jyoti Misra, and Peng Tao

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Representable and Diagonally Representable Weakening Relation Algebras, Peter Jipsen and Jaš Šemrl

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Feasibility Analysis of AERONET Lunar AOD for Nighttime Particulate Matter Estimation, Kwang Nyun Kim, Seung Hee Kim, Sang Seo Park, and Yun Gon Lee

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Uncertainty from the Aharonov–Vaidman identity, Matthew S. Leifer

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Predicting Suicidal and Self-Injurious Events in a Correctional Setting Using AI Algorithms on Unstructured Medical Notes and Structured Data, Hongxia Lu, Alex Barrett, Albert Pierce, Jianwei Zheng, Yun Wang, Chun Chiang, and Cyril Rakovski

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Some Properties of Conjunctivity (Subfitness) in Generalized Settings, M. Andrew Moshier, Jorge Picado, and Aleš Pultr

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Studying the Impact of the Geospace Environment on Solar Lithosphere Coupling and Earthquake Activity, Dimitar Ouzounov and Galina Khachikyan

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Aharonov–Bohm Effect with an Effective Complex-Valued Vector Potential, Ismael L. Paiva, Yakir Aharonov, Jeff Tollaksen, and Mordecai Waegell

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Weak Measurements and Quantum-to-Classical Transitions in Free Electron–Photon Interactions, Yiming Pan, Eliahu Cohen, Ebrahim Karimi, Avraham Gover, Norbert Schönenberger, Tomáš Chlouba, Kangpeng Wang, Saar Nehemia, Peter Hommelhoff, Ido Kaminer, and Yakir Aharonov

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Photons Are Lying About Where They Have Been, Again, Gregory Reznick, Carlotta Versmold, Jan Dziewior, Florian Huber, Shrobona Bagchi, Harald Weinfurter, Justin Dressel, and Lev Vaidman

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Flux-Quanta Injection for Nonreciprocal Current Control in a Two-Dimensional Noncentrosymmetric Superconducting Structure, Serafim Teknowijoyo, Sara Chahid, and Armen Gulian

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Monitoring Dam Stability Using PSI and SBAS Analysis, Rejoice Thomas, Wenzhao Li, Shahryar Fazli, Nikolay Grisel Todorov, and Hesham el-Askary

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A New Type of Quaternionic Regularity, Adrian Vajiac

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Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes, Gennady M. Verkhivker, Mohammed Alshahrani, and Grace Gupta

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Coarse-Grained Molecular Simulations and Ensemble-Based Mutational Profiling of Protein Stability in the Different Functional Forms of the SARS-CoV-2 Spike Trimers: Balancing Stability and Adaptability in BA.1, BA.2 and BA.2.75 Variants, Gennady M. Verkhivker, Mohammed Alshahrani, and Grace Gupta

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Exploring Conformational Landscapes and Cryptic Binding Pockets in Distinct Functional States of the SARS-CoV-2 Omicron BA.1 and BA.2 Trimers: Mutation-Induced Modulation of Protein Dynamics and Network-Guided Prediction of Variant-Specific Allosteric Binding Sites, Gennady M. Verkhivker, Mohammed Alshahrani, and Grace Gupta

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From Deep Mutational Mapping of Allosteric Protein Landscapes to Deep Learning of Allostery and Hidden Allosteric Sites: Zooming in on “Allosteric Intersection” of Biochemical and Big Data Approaches, Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, Sian Xiao, and Peng Tao

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Quantum Reality with Negative-Mass Particles, Mordecai Waegell, Eliahu Cohen, Avshalom C. Elitzur, Jeff Tollaksen, and Yakir Aharonov

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Verifying Empirical Predictive Modeling of Societal Vulnerability to Hazardous Events: A Monte Carlo Experimental Approach, Yi Victor Wang, Seung Hee Kim, and Menas C. Kafatos

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Mapping California Rice Using Optical and SAR Data Fusion with Phenological Features in Google Earth Engine, Li Wenzhao, Hesham el-Askary, and Daniele C. Struppa

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Entangled Photon Anti-Correlations Are Evident from Classical Electromagnetism, Ken Wharton and Emily Adlam

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A Causal Inference Study: The Impact of the Combined Administration of Donepezil and Memantine on Decreasing Hospital and Emergency Department Visits of Alzheimer’s Disease Patients, Ehsan Yaghmaei, Albert Pierce, Hongxia Lu, Yesha M. Patel, Louis Ehwerhemuepha, Ahmad Rezaie, Seyed Ahmad Sajjadi, and Cyril Rakovski

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Application of Model-Based Time Series Prediction of Infrared Long-Wave Radiation Data for Exploring the Precursory Patterns Associated with the 2021 Madoi Earthquake, Jingye Zhang, Ke Sun, Junqing Zhu, Ning Mao, and Dimitar Ouzounov

Submissions from 2022

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A Finite Axiomatization of Positive MV-Algebras, Marco Abbadini, Peter Jipsen, Tomáš Kroupa, and Sara Vannucci

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Determinism Beyond Time Evolution, Emily Adlam

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Does Science Need Intersubjectivity? The Problem of Confirmation in Orthodox Interpretations of Quantum Mechanics, Emily Adlam

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Laws of Nature as Constraints, Emily Adlam

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Operational Theories as Structural Realism, Emily Adlam

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Tabletop Experiments for Quantum Gravity Are Also Tests of the Interpretation of Quantum Mechanics, Emily Adlam

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Two Roads to Retrocausality, Emily Adlam

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Watching the Clocks: Interpreting the Page-Wootters Formalism and the Internal Quantum Reference Frame Programme, Emily Adlam

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Symmetry and Control in Thermodynamics, Emily Adlam, L. Uribarri, and N. Allen

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A Unified Spproach to Schrödinger Evolution of Superoscillations and Supershifts, Yakir Aharonov, Jussi Behrndt, Fabrizio Colombo, and Peter Schlosser

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On Superoscillations and Supershifts in Several Variables, Yakir Aharonov, Fabrizio Colombo, Andrew N. Jordan, Irene Sabadini, Tomer Shushi, Daniele C. Struppa, and Jeff Tollaksen

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Complex-Valued Classical Behavior from the Correspondence Limit of Quantum Mechanics with Two Boundary Conditions, Yakir Aharonov and Tomer Shushi

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The Super Dirac δ Function and Its Applications, Yakir Aharonov and Tomer Shushi

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An Approach to the Gaussian RBF Kernels via Fock Spaces, Daniel Alpay, Fabrizio Colombo, Kamal Diki, and Irene Sabadini

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Reproducing Kernel Hilbert Spaces of Polyanalytic Functions of Infinite Order, Daniel Alpay, Fabrizio Colombo, Kamal Diki, and Irene Sabadini

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Discrete Analytic Functions, Structured Matrices and a New Family of Moment Problems, Daniel Alpay, Fabrizio Colombo, Kamal Diki, Irene Sabadini, and Dan Volok

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Fock and Hardy Spaces: Clifford Appell Case, Daniel Alpay, Kamal Diki, and Irene Sabadini

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mu-Brownian Motion, Dualities, Diffusions, Transforms, and Reproducing Kernel Hilbert Spaces, Daniel Alpay and Palle Jorgensen

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Representation Theory and Multilevel Filters, Daniel Alpay, Palle Jorgensen, and Izchak Lewkowicz

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White Noise Space Analysis and Multiplicative Change of Measures, Daniel Alpay, Palle Jorgensen, and Motke Porat

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Discrete Analytic Schur Functions, Daniel Alpay and Dan Volok

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A Question of Fundamental Methodology: Reply to Mikhail Katz and His Coauthors, Tom Archibald, Richard T. W. Arthur, Giovanni Ferraro, Jeremy Gray, Douglas Jesseph, Jesper Lützen, Marco Panza, David Rabouin, and Gert Schubring

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Quasi-Menger and Weakly Menger Frames, Tilahun Bayih, Themba Dube, and Oghenetega Ighedo

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Boundedness of Some Multi-parameter Fiber-wise Multiplier Operators, Frédéric Bernicot and Polona Durcik

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What is Nonclassical about Uncertainty Relations?, Lorenzo Catani, Matthew S. Leifer, Giovanni Scala, David Schmid, and Robert W. Spekkens

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An Alternative to the Standard Model, Scott Chapman

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Superoscillating Sequences and Supershifts for Families of Generalized Functions, F. Colombo, I. Sabadini, Daniele Carlo Struppa, and A. Yger

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A Novel Correction for the Adjusted Box-Pierce Test, Sidy Danioko, Jianwei Zheng, Kyle Anderson, Alexander Barrett, and Cyril S. Rakovski

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Snow Cover Variability and Trend Over the Hindu Kush Himalayan Region Using MODIS and SRTM Data, Nirasindhu Desinayak, Anup K. Prasad, Hesham el-Askary, Menas Kafatos, and Ghassem R. Asrar

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Application of the Weibull Model to Describe the Kinetic Behaviors of Thiol Decolorizers in Chlorogenic Acid-Lysine Solutions, Charles Taylor Drucker, Lilian Were Senger, and Criselda Toto Pacioles

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Ideals of Functions with Compact Support in the Integer-valued Case, Themba Dube, Oghenetega Ighedo, and Batsile Tlharesakgosi

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An Uncountable Ergodic Roth Theorem and Applications, Polona Durcik, Rachel Greenfeld, Annina Iseli, Asgar Jamneshan, and José Madrid

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Local Bounds for Singular Brascamp–Lieb Forms with Cubical Structure, Polona Durcik, Lenka Slavíková, and Chrisoph Thiele

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Assessing the Reidentification Risks Posed by Deep Learning Algorithms Applied to ECG Data, Arin Ghazarian, Jianwei Zheng, Daniele Struppa, and Cyril Rakovski

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Hadamard’s Variational Formula in Terms of Stress and Strain Tensors, Björn Gustafsson and Ahmed Sebbar

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Biophysical Insight into the SARS-CoV2 Spike–ACE2 Interaction and Its Modulation by Hepcidin through a Multifaceted Computational Approach, Hamid Hadi-Alijanvand, Luisa Di Paola, Guang Hu, David M. Leitner, Gennady M. Verkhivker, Peixin Sun, Humanath Poudel, and Alessandro Giuliani

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Weakness of Weak Values: Incompatibility of Anomalous Pulse-spectrum Amplification and Optical Frequency Combs, John C. Howell

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Primitive Lattice Varieties, Peter Jipsen and J. B. Nation

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Black Holes, Disk Structures, and Cosmological Implications in e-dimensional Space, Subhash Kak and Menas C. Kafatos

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Observations on the Stress Related Variations of Soil Radon Concentration in the Gulf of Corinth, Greece, Vassilios K. Karastathis, George Eleftheriou, Menas Kafatos, Kanaris Tsinganos, G-Akis Tselentis, Evangelos Mouzakiotis, and Dimitar Ouzounov

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Meteorological Characteristics of Fog Events in Korean Smart Cities and Machine Learning Based Visibility Estimation, Jaemin Kim, Seung Hee Kim, Hyun Woo Seo, Yi Victor Wang, and Yun Gon Lee

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Monitoring Fast Superconducting Qubit Dynamics Using A Neural Network, G. Koolstra, N. Stevenson, S. Barzili, L. Burns, K. Siva, S. Greenfield, W. Livingston, A. Hashim, R. K. Naik, J. M. Kreikebaum, K. P. O'Brien, D. I. Santiago, Justin Dressel, and I. Siddiqi

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Interpretable Machine Learning Models for Molecular Design of Tyrosine Kinase Inhibitors Using Variational Autoencoders and Perturbation-Based Approach of Chemical Space Exploration, Keerthi Krishnan, Ryan Kassab, Steve Agajanian, and Gennady M. Verkhivker

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Probing Conformational Landscapes and Mechanisms of Allosteric Communication in the Functional States of the ABL Kinase Domain Using Multiscale Simulations and Network-Based Mutational Profiling of Allosteric Residue Potentials, Keerthi Krishnan, Hao Tian, Peng Tao, and Gennady M. Verkhivker

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Surface Urban Heat Island in South Korea’s New Towns with Different Urban Planning, Kyungil Lee, Yoonji Kim, Hyun Chan Sung, Seung Hee Kim, and Seong Woo Jeon

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Experimental Demonstration of Continuous Quantum Error Correction, William P. Livingston, Machiel S. Blok, Emmanuel Flurin, Justin Dressel, Andrew N. Jordan, and Irfan Siddiqi

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A Comparative Study on Deep Learning Models for Text Classification of Unstructured Medical Notes with Various Levels of Class Imbalance, Hongxia Lu, Louis Ehwerhemuepha, and Cyril Rakovski

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Titaniferous-Vanadiferous, Magnetite-Ilmenite Mineralization in a Mafic Suite within the Chhotanagpur Gneissic Complex, Bihar, India, Ashmeer Mohammad, Anup K. Prasad, Kehe-u Wetsah, Mohammad Azad, Vivek Aryan, and Hesham el-Askary

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Multi-sectoral Impact Assessment of an Extreme African Dust Episode in the Eastern Mediterranean in March 2018, Alexandra Monteiro, Sara Basart, Stelios Kazadzis, Antonis Gkikas, Sophie Vandenbussche, Aurelio Tobias, Carla Gama, Carlos Pérez García-Pando, Enric Tarradellas, George Notas, Nick Middleton, Jonilda Kushta, Vassilis Amiridis, Kostas Lagouvardos, Panagiotis G. Kosmopoulos, Vasiliki Kotroni, Maria Kanakidou, Nikos Mihalopoulos, Nikos Kalivitis, Pavla Daggson-Waldhauserová, Hesham el-Askary, Klaus Sievers, T. Giannaros, Lucia Mona, Marcus Hirtl, Paul Skomorowski, Slobodan Nickovic, Athanasios Votsis, Timo H. Virtanen, Theodoros Christoudias, Biagio Di Mauro, Serena Trippetta, Stanislav Kutuzov, and Outi Meinander

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Isolated Objects and Their Evolution: A Derivation of the Propagator’s Path Integral for Spinless Elementary Particles, Domenico Napoletani and Daniele Carlo Struppa

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Editorial: Geospace Observation of Natural Hazards, Dimitar Ouzounov, Jann-Yenq Liu, Patrick T. Taylor, and Katsumi Hattori

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Non-Inertial Quantum Clock Frames Lead to Non-Hermitian Dynamics, Ismael L. Paiva, Amit Te'eni, Bar Y. Peled, Eliahu Cohen, and Yakir Aharonov

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Toward Informatics-Enabled Preparedness for Natural Hazards to Minimize Health Impacts of Climate Change, Jimmy Phuong, Naomi O. Riches, Luca Calzoni, Gora Datta, Deborah Duran, Asiyah Yu Lin, Ramesh P. Singh, Anthony E. Solomonides, Noreen Y. Whysel, and Ramakanth Kavuluru

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Accuracy Assessment, Comparative Performance, and Enhancement of Public Domain Digital Elevation Models (ASTER 30 m, SRTM 30 m, CARTOSAT 30 m, SRTM 90 m, MERIT 90 m, and TanDEM-X 90 m) Using DGPS, Kumari Preety, Anup K. Prasad, Atul K. Varma, and Hesham el-Askary

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Allosteric Determinants of the SARS-CoV-2 Spike Protein Binding with Nanobodies: Examining Mechanisms of Mutational Escape and Sensitivity of the Omicron Variant, Gennady M. Verkhivker

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Conformational Flexibility and Local Frustration in the Functional States of the SARS-CoV-2 Spike B.1.1.7 and B.1.351 Variants: Mutation-Induced Allosteric Modulation Mechanism of Functional Dynamics and Protein Stability, Gennady M. Verkhivker

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Structural and Computational Studies of the SARS-CoV-2 Spike Protein Binding Mechanisms with Nanobodies: From Structure and Dynamics to Avidity-Driven Nanobody Engineering, Gennady M. Verkhivker

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Computer Simulations and Network-Based Profiling of Binding and Allosteric Interactions of SARS-CoV-2 Spike Variant Complexes and the Host Receptor: Dissecting the Mechanistic Effects of the Delta and Omicron Mutations, Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, and Keerthi Krishnan

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Integrating Conformational Dynamics and Perturbation-Based Network Modeling for Mutational Profiling of Binding and Allostery in the SARS-CoV-2 Spike Variant Complexes with Antibodies: Balancing Local and Global Determinants of Mutational Escape Mechanisms, Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, and Keerthi Krishnan

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Probing Mechanisms of Binding and Allostery in the SARS-CoV-2 Spike Omicron Variant Complexes with the Host Receptor: Revealing Functional Roles of the Binding Hotspots in Mediating Epistatic Effects and Communication with Allosteric Pockets, Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, and Keerthi Krishnan

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High Spatial and Temporal Resolution Census Data Reveals Communities at Risk Along the Wildland-Urban Interface (WUI) in California, USA, Jessica E. Viner, Slade T. Laszewski, Wesley Ho, Justin Ewoldt, Pionnah Gregorio, Liz Lyon, Brian Hoover, and Shenyue Jia

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Golay Codes and Quantum Contextuality, Mordecai Waegell and P. K. Aravind

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Relative Importance of Radar Variables for Nowcasting Heavy Rainfall: A Machine Learning Approach, Yi Victor Wang, Seung Hee Kim, Geunsu Lyu, Choeng-Lyong Lee, Gyuwon Lee, Ki-Hong Min, and Menas C. Kafatos

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Dissecting Mutational Allosteric Effects in Alkaline Phosphatases Associated with Different Hypophosphatasia Phenotypes: An Integrative Computational Investigation, Fei Xiao, Ziyun Zhou, Xingyu Song, Mi Gan, Jie Long, Gennady M. Verkhivker, and Guang Hu

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Machine Learning and Protein Allostery, Sian Xiao, Gennady M. Verkhivker, and Peng Tao

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An Artificial Intelligence-Based Noninvasive Solution to Estimate Pulmonary Artery Pressure, Jianwei Zheng, Islam Abudayyeh, Georgi Mladenov, Daniele Struppa, Guohua Fu, Huimin Chu, and Cyril Rakovski

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A High Precision Machine Learning-Enabled System for Predicting Idiopathic Ventricular Arrhythmia Origins, Jianwei Zheng, Guohua Fu, Daniele Struppa, Islam Abudayyeh, Tahmeed Contractor, Kyle Anderson, Huimin Chu, and Cyril Rakovski

Submissions from 2021

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Failed Attempt to Escape from the Quantum Pigeon Conundrum, Yakir Aharonov, Shrobona Bagchi, Justin Dressel, Gregory Reznik, Michael Ridley, and Lev Vaidman

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Green's Function for the Schrodinger Equation with a Generalized Point Interaction and Stability of Superoscillations, Yakir Aharonov, Jussi Behrndt, Fabrizio Colombo, and Peter Schlosser

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A Dynamical Quantum Cheshire Cat Effect and Implications for Counterfactual Communication, Yakir Aharonov, Eliahu Cohen, and Sandu Popescu

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A New Method to Generate Superoscillating Functions and Supershifts, Yakir Aharonov, Fabrizio Colombo, Irene Sabadini, Tomer Shushi, Daniele C. Struppa, and Jeff Tollaksen

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On Conservation Laws in Quantum Mechanics, Yakir Aharonov, Sandu Popescu, and Daniel Rohrlich

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Generalized Grassmann Algebras and Applications to Stochastic Processes, Daniel Alpay, Paula Cerejeiras, and Uwe Kaehler

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Krein Reproducing Kernel Modules in Clifford Analysis, Daniel Alpay, Paula Cerejeiras, and Uwe Kähler

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On a Polyanalytic Approach to Noncommutative de Branges–Rovnyak Spaces and Schur Analysis, Daniel Alpay, Fabrizio Colombo, Kamal Diki, and Irene Sabadini